Title:

Next Generation Sequencing in Arabidopsis Research Workshop

Where:

Norwich, UK

Start Date:

Tuesday 17th April

Description:

This workshop is free to attend and aims to outline the Next Generation Sequencing platforms and pipelines at The Genome Analysis Centre (TGAC) and how they can further Arabidopsis research.

13:30 - 14:00 - Welcome and introduction to TGAC - Mario Caccamo (Head of Bioinformatics)

14:00 - 14:30 - Sequencing libraries and platforms - Melanie Febrer (Library Construction Team Leader)

14:30 - 14:50 - Re-sequencing Arabidopsis accessions - Sarah Ayling (Computational Genomics Team Leader)

14:50 - 15:30 - Introduction to GridGate (a bioinformatics as a service platform) - Greg Compton (i-Abra)

Hands on experience using the ShoreMap pipeline

15:30 - 16:00 - Coffee break

16:00 - 16:20 - Expression analysis (RNA-seq) - David Swarbreck (Genome Analysis Team Leader)

16:20 - 16:45 - The Tuxedo pipeline in GridGate - Greg Compton

16:45 - 17:00 - Working with TGAC - Sophie Janacek (Project Manager)

 

 

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